Index

_

_cam (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) _emf (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) _emi (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) _frame_number (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) _get_dataset() (pyfast_adt.main.MastronardeRigidBody method) (pyfast_adt.main.tracking.MastronardeRigidBody method) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody method) _id (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 attribute) _immgr (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute)

_memReader (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) _obj (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) _readSingleImage() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) _recording (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) _soft_trigger_exposure (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) _soft_trigger_mode (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) _state (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) _vp (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute)

A

a (pyfast_adt.main.InSituTracker attribute) A (pyfast_adt.main.KalmanFilter attribute) a (pyfast_adt.main.tracking.insitu_tracker.InSituTracker attribute) (pyfast_adt.main.tracking.InSituTracker attribute) A (pyfast_adt.main.tracking.KalmanFilter attribute) (pyfast_adt.main.tracking.KalmanFilter.KalmanFilter attribute) abort_data_acquisition() (pyfast_adt.main.FAST_ADT_gui.FastADT method) acc_std_P (pyfast_adt.main.tracking.KF_custom_models.ukf_6D attribute) acc_x0 (pyfast_adt.main.tracking.KF_custom_models.ukf_6D attribute) acc_y0 (pyfast_adt.main.tracking.KF_custom_models.ukf_6D attribute) acquire_and_save_flatfield() (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) acquire_image() (in module pyfast_adt.main.fast_adt_func) (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) acquire_image_and_show() (in module pyfast_adt.main.fast_adt_func) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) acquire_image_cred() (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) acquire_image_fast() (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) acquire_series_images() (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) acquire_tracking_images() (in module pyfast_adt.main.fast_adt_func) acquire_z_scan_tem_mode() (in module pyfast_adt.main.fast_adt_func) acquireImage() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) acquisition_cRED_data() (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method)

addCross (pyfast_adt.main.adaptor.camera.merlin_io.MIBProperties attribute) analyze_xy_dynamics() (pyfast_adt.main.MastronardeRigidBody method) (pyfast_adt.main.tracking.MastronardeRigidBody method) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody method) analyze_xy_dynamics_multiple() (pyfast_adt.main.MastronardeRigidBody method) (pyfast_adt.main.tracking.MastronardeRigidBody method) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody method) angle (pyfast_adt.main.beam_calibration.BeamCalibration attribute) angle_tracking() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) angle_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) app (in module pyfast_adt.main.main_GUI) apply_affine() (pyfast_adt.main.beam_calibration.BeamCalibration method) apply_flatfield_correction() (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) apply_image_corrections() (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) apply_rotation() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.beam_calibration.BeamCalibration method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) automatic_eucentric_height() (in module pyfast_adt.main.fast_adt_func) ax1 (in module pyfast_adt.main.tracking.sort_tracker)

B

B (pyfast_adt.main.KalmanFilter attribute) (pyfast_adt.main.tracking.KalmanFilter attribute) (pyfast_adt.main.tracking.KalmanFilter.KalmanFilter attribute) backlash_correction_alpha() (in module pyfast_adt.main.fast_adt_func) backlash_correction_single_axis() (in module pyfast_adt.main.fast_adt_func) backlash_data_acquisition() (in module pyfast_adt.main.fast_adt_func) backlash_stage_acquisition() (in module pyfast_adt.main.fast_adt_func) backup_roi (pyfast_adt.main.Tomography_tracker attribute) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker attribute) (pyfast_adt.main.tracking.Tomography_tracker attribute), [1] bb_x (in module pyfast_adt.main.tracking.sort_tracker) bb_y (in module pyfast_adt.main.tracking.sort_tracker) beam_ampl_value() (pyfast_adt.main.handpanels_simulator.HandPanel method) beam_blank() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) beam_coordinates (pyfast_adt.main.beam_calibration.BeamCalibration attribute) beam_intensity_1 (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base attribute) (pyfast_adt.main.adaptor.microscope.Tem_base attribute) (pyfast_adt.main.adaptor.Tem_base attribute) (pyfast_adt.main.Tem_base attribute) beam_intensity_2 (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base attribute) (pyfast_adt.main.adaptor.microscope.Tem_base attribute) (pyfast_adt.main.adaptor.Tem_base attribute) (pyfast_adt.main.Tem_base attribute) beam_shift_vs_image_calibration() (in module pyfast_adt.main.fast_adt_func) beamblank_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) BeamCalibration (class in pyfast_adt.main.beam_calibration) beamshift_test() (in module pyfast_adt.main.temscript_remote_test) beamshift_to_pix() (pyfast_adt.main.beam_calibration.BeamCalibration method) beamshift_tracking() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method)

beamshift_tracking_stem() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) bilateral_d (pyfast_adt.main.Tomography_tracker attribute) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker attribute) (pyfast_adt.main.tracking.Tomography_tracker attribute), [1] bilateral_sigmacolor (pyfast_adt.main.Tomography_tracker attribute) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker attribute) (pyfast_adt.main.tracking.Tomography_tracker attribute), [1] bilateral_sigmaspace (pyfast_adt.main.Tomography_tracker attribute) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker attribute) (pyfast_adt.main.tracking.Tomography_tracker attribute), [1] binning (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base attribute) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta attribute) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf attribute) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator attribute) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r attribute) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) binning_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) black_frame (pyfast_adt.main.server_sharedmemory_stream.camera_server attribute) brand (pyfast_adt.main.FAST_ADT_gui.FastADT attribute) (pyfast_adt.main.handpanels_simulator.HandPanel attribute) (pyfast_adt.main.main_GUI.MainGUI attribute) brand_cam (pyfast_adt.main.main_GUI.MainGUI attribute) brand_cam_var (pyfast_adt.main.main_GUI.MainGUI attribute) brand_var (pyfast_adt.main.main_GUI.MainGUI attribute) browse_dir() (pyfast_adt.main.FAST_ADT_gui.FastADT method) buffer (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base attribute) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta attribute) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf attribute) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator attribute) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r attribute) (pyfast_adt.main.adaptor.camera.merlin_io.MIBProperties attribute) buffer_size (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base attribute) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta attribute) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf attribute) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator attribute) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r attribute) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) button (in module pyfast_adt.main.tkinter_test) button1 (pyfast_adt.main.main_GUI.MainGUI attribute) button2 (pyfast_adt.main.main_GUI.MainGUI attribute)

C

calc_stage_speed() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) calculate_correlation() (pyfast_adt.main.beam_calibration.BeamCalibration method) calculate_shift_with_opencv() (in module pyfast_adt.main.fast_adt_func) calculate_storage_capacity() (in module pyfast_adt.main.fast_adt_func) calculate_wavelength() (in module pyfast_adt.main.fast_adt_func) calibrate_beam_shift() (in module pyfast_adt.main.fast_adt_func) calibrated_speed (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei attribute) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy attribute) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol attribute) (pyfast_adt.main.adaptor.microscope.Tem_fei attribute) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy attribute) (pyfast_adt.main.adaptor.microscope.Tem_jeol attribute) (pyfast_adt.main.adaptor.Tem_fei attribute) (pyfast_adt.main.adaptor.Tem_fei_temspy attribute) (pyfast_adt.main.adaptor.Tem_jeol attribute) (pyfast_adt.main.Tem_fei attribute) (pyfast_adt.main.Tem_fei_temspy attribute) (pyfast_adt.main.Tem_jeol attribute) cam (in module pyfast_adt.main.adaptor.camera.adaptor_ceta) (in module pyfast_adt.main.adaptor.camera.adaptor_haadf) (in module pyfast_adt.main.adaptor.camera.adaptor_merlin) (in module pyfast_adt.main.adaptor.camera.adaptor_serval) (in module pyfast_adt.main.adaptor.camera.adaptor_simulator) (in module pyfast_adt.main.adaptor.camera.adaptor_us2000) (in module pyfast_adt.main.adaptor.camera.adaptor_us4000) (in module pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU) (in module pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta attribute) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) Cam_base (class in adaptor.camera.adaptor_cam), [1] (class in pyfast_adt.main.adaptor.camera.adaptor_cam) Cam_ceta (class in pyfast_adt.main.adaptor.camera.adaptor_ceta) Cam_haadf (class in pyfast_adt.main.adaptor.camera.adaptor_haadf) Cam_medipix3 (class in pyfast_adt.main.adaptor.camera.adaptor_serval) Cam_merlin (class in pyfast_adt.main.adaptor.camera.adaptor_merlin) Cam_simulator (class in pyfast_adt.main.adaptor.camera.adaptor_simulator) cam_table (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf attribute) (pyfast_adt.main.beam_calibration.BeamCalibration attribute) (pyfast_adt.main.handpanels_simulator.HandPanel attribute) Cam_timepix1 (class in pyfast_adt.main.adaptor.camera.adaptor_timepix1) Cam_us2000 (class in pyfast_adt.main.adaptor.camera.adaptor_us2000) Cam_us4000 (class in pyfast_adt.main.adaptor.camera.adaptor_us4000) Cam_xf416r (class in pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU) (class in pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit) CAMCLIB (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) camera (pyfast_adt.main.FAST_ADT_gui.FastADT attribute) (pyfast_adt.main.handpanels_simulator.HandPanel attribute) camera_client() (in module pyfast_adt.main.client_sharedmemory_stream) camera_server (class in pyfast_adt.main.server_sharedmemory_stream) cameraGPU (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) cameraLiveGPU (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) change_beam_settings_image() (pyfast_adt.main.FAST_ADT_gui.FastADT method) change_colors() (pyfast_adt.main.FAST_ADT_gui.FastADT method) checked_blank_value() (pyfast_adt.main.handpanels_simulator.HandPanel method) checked_diff_value() (pyfast_adt.main.handpanels_simulator.HandPanel method) checked_screen_value() (pyfast_adt.main.handpanels_simulator.HandPanel method) checked_wobbler_value() (pyfast_adt.main.handpanels_simulator.HandPanel method) cleanup() (pyfast_adt.main.server_sharedmemory_stream.camera_server method) clear_backlash_entries() (pyfast_adt.main.FAST_ADT_gui.FastADT method)

client (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf attribute) (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei attribute) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy attribute) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol attribute) (pyfast_adt.main.adaptor.microscope.Tem_fei attribute) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy attribute) (pyfast_adt.main.adaptor.microscope.Tem_jeol attribute) (pyfast_adt.main.adaptor.Tem_fei attribute) (pyfast_adt.main.adaptor.Tem_fei_temspy attribute) (pyfast_adt.main.adaptor.Tem_jeol attribute) (pyfast_adt.main.Tem_fei attribute) (pyfast_adt.main.Tem_fei_temspy attribute) (pyfast_adt.main.Tem_jeol attribute) client_socket (pyfast_adt.main.server_socket_stream.server_img attribute) collect_image_cred() (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) colours (in module pyfast_adt.main.tracking.sort_tracker) compute_linear_fits() (pyfast_adt.main.MastronardeRigidBody method) (pyfast_adt.main.tracking.MastronardeRigidBody method) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody method) connect() (adaptor.camera.adaptor_cam.Cam_base method), [1] (adaptor.microscope.adaptor_tem.Tem_base method) (in module adaptor.camera.adaptor_cam), [1] (in module adaptor.microscope.adaptor_tem) (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) connect_tia() (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) cont_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) continuous_rotation() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) correct_deadpixels() (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) correctCross() (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) counter_img (pyfast_adt.main.Tomography_tracker attribute) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker attribute) (pyfast_adt.main.tracking.Tomography_tracker attribute), [1] cov_support (in module pyfast_adt.main.tracking.sort_tracker) create_widgets() (pyfast_adt.main.FAST_ADT_gui.FastADT method) (pyfast_adt.main.handpanels_simulator.HandPanel method) custom_model (pyfast_adt.main.Tomography_tracker attribute) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker attribute) (pyfast_adt.main.tracking.Tomography_tracker attribute), [1]

D

dark_bin1 (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) dark_bin2 (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) dark_bin4 (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) dark_bin8 (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) datasets (pyfast_adt.main.MastronardeRigidBody attribute) (pyfast_adt.main.tracking.MastronardeRigidBody attribute) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody attribute) default_binsize (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) default_exposure (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) delay (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base attribute) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta attribute) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf attribute) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator attribute) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r attribute) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) delete_last() (pyfast_adt.main.FAST_ADT_gui.FastADT method) deleteAllImages() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) deleteImageByIndex() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) delimiter (pyfast_adt.main.MastronardeRigidBody attribute) (pyfast_adt.main.tracking.MastronardeRigidBody attribute) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody attribute) detect() (in module pyfast_adt.main.tracking.Detector) detector_config (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) dets (in module pyfast_adt.main.tracking.sort_tracker) dets_list (in module pyfast_adt.main.tracking.sort_tracker) dets_support (in module pyfast_adt.main.tracking.sort_tracker) diffraction() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method)

dimensions (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) dir_path (in module pyfast_adt.main.FAST_ADT_gui) (in module pyfast_adt.main.handpanels_simulator) (in module pyfast_adt.main.main_GUI) display (in module pyfast_adt.main.tracking.sort_tracker) display_crystal_tracking() (in module pyfast_adt.main.fast_adt_func) display_image1() (in module pyfast_adt.main.fast_adt_func) display_image2() (in module pyfast_adt.main.fast_adt_func) display_image3() (in module pyfast_adt.main.fast_adt_func) display_tracking() (pyfast_adt.main.Tomography_tracker method) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker method) (pyfast_adt.main.tracking.Tomography_tracker method), [1] draw_circle() (pyfast_adt.main.Tomography_tracker method) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker method) (pyfast_adt.main.tracking.Tomography_tracker method), [1] draw_circle_beam_shift() (in module pyfast_adt.main.fast_adt_func) drc_index (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) drc_name (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r attribute) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) dt (pyfast_adt.main.InSituTracker attribute) (pyfast_adt.main.KalmanFilter attribute) (pyfast_adt.main.tracking.insitu_tracker.InSituTracker attribute) (pyfast_adt.main.tracking.InSituTracker attribute) (pyfast_adt.main.tracking.KalmanFilter attribute) (pyfast_adt.main.tracking.KalmanFilter.KalmanFilter attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_2D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_4D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_6D attribute)

E

elaborate_image_cred() (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) EMVector2dict() (in module pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU) (in module pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit) enable_streaming() (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) establish_connection() (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) establish_data_connection() (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) euc_focus() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method)

eucentric_height_z_scan() (in module pyfast_adt.main.fast_adt_func) evaluate_average_displacement_track_precision() (in module pyfast_adt.main.fast_adt_func) evaluate_timings() (in module pyfast_adt.main.fast_adt_func) evaluate_tracking_precision() (in module pyfast_adt.main.fast_adt_func) existing_roi (pyfast_adt.main.Tomography_tracker attribute) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker attribute) (pyfast_adt.main.tracking.Tomography_tracker attribute), [1] exp_name() (pyfast_adt.main.FAST_ADT_gui.FastADT method) exp_type (pyfast_adt.main.Tomography_tracker attribute) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker attribute) (pyfast_adt.main.tracking.Tomography_tracker attribute), [1] exposure (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base attribute) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta attribute) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf attribute) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator attribute) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r attribute) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) exposure_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method)

F

f_track() (pyfast_adt.main.tracking.KF_custom_models.ukf_2D method) (pyfast_adt.main.tracking.KF_custom_models.ukf_4D method) (pyfast_adt.main.tracking.KF_custom_models.ukf_6D method) fake() (in module pyfast_adt.main.fast_adt_func) (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) FastADT (class in pyfast_adt.main.FAST_ADT_gui) fig (in module pyfast_adt.main.tracking.sort_tracker)

final_angle_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) fit_dataset() (pyfast_adt.main.MastronardeRigidBody method) (pyfast_adt.main.tracking.MastronardeRigidBody method) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody method) fit_rigid_body_model_single_dataset() (in module pyfast_adt.main.fast_adt_func) fit_single_dataset_from_gui() (pyfast_adt.main.MastronardeRigidBody method) (pyfast_adt.main.tracking.MastronardeRigidBody method) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody method) flatfield_bin1 (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) flatfield_bin2 (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) flatfield_bin4 (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) flatfield_bin8 (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) folder_path (pyfast_adt.main.MastronardeRigidBody attribute) (pyfast_adt.main.tracking.MastronardeRigidBody attribute) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody attribute) frame (pyfast_adt.main.server_sharedmemory_stream.camera_server attribute) frame_shape (pyfast_adt.main.server_sharedmemory_stream.camera_server attribute) frameDouble (pyfast_adt.main.adaptor.camera.merlin_io.MIBProperties attribute) from_buffer() (pyfast_adt.main.adaptor.camera.merlin_io.MIBProperties class method) FUNCTION_MODES (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol attribute) (pyfast_adt.main.adaptor.microscope.Tem_jeol attribute) (pyfast_adt.main.adaptor.Tem_jeol attribute) (pyfast_adt.main.Tem_jeol attribute) FUNCTION_MODES_stem (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol attribute) (pyfast_adt.main.adaptor.microscope.Tem_jeol attribute) (pyfast_adt.main.adaptor.Tem_jeol attribute) (pyfast_adt.main.Tem_jeol attribute)

G

gap (pyfast_adt.main.adaptor.camera.merlin_io.MIBProperties attribute) generate_bot_frame() (pyfast_adt.main.handpanels_simulator.HandPanel method) generate_tracking_file() (in module pyfast_adt.main.fast_adt_func) get_a_backlash_correction_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) get_available_memory_gb() (in module pyfast_adt.main.fast_adt_func) get_backlash_position_entries() (pyfast_adt.main.FAST_ADT_gui.FastADT method) get_beam_intensity() (in module pyfast_adt.main.fast_adt_func) get_beam_shift() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) get_binning() (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) get_brand() (pyfast_adt.main.main_GUI.MainGUI method) get_camera_characteristic() (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) get_camera_dimensions() (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) get_defocus() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) get_diff_lens_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) get_dir_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) get_exp_num_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) get_exposure() (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) get_high_performance_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) get_illumination_mode() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) get_image() (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) get_image_dimensions() (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) get_image_index() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) get_image_size() (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) get_init_position_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) get_instrument_mode() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) get_intensity() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) get_KL() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) get_KL_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) get_mag_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) get_magnification() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) get_movie() (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method)

get_name() (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) get_next_empty_image_index() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) get_processing() (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) get_projection_mode() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) get_sample_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) get_screen_position() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) get_speed_tracking() (pyfast_adt.main.FAST_ADT_gui.FastADT method) get_spotsize() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) get_stage() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) get_stem_beamshift() (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) get_stem_binning_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) get_stem_image_size_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) get_switch_axis_rb() (pyfast_adt.main.FAST_ADT_gui.FastADT method) get_timestamps() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) get_tracking_method() (pyfast_adt.main.FAST_ADT_gui.FastADT method) get_voltage() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) get_work_dir() (pyfast_adt.main.FAST_ADT_gui.FastADT method) get_x_backlash_correction_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) get_y_backlash_correction_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) get_z_backlash_correction_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) getBinning() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) getCameraDimensions() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) getCameraName() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) getCameraType() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) GetCurrentCameraConfiguration() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) getCurrentCameraInfo() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) getCurrentConfig() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) getCurrentConfigName() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) getEMMenuVersion() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) getEMVectorByIndex() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) getFunctionMode() (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_jeol method) getImage() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) getImageByIndex() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) getImageDataByIndex() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) getImageDimensions() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) getPhysicalPixelsize() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) go_to() (in module pyfast_adt.main.fast_adt_func) go_to_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) grab_image_from_detector() (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) grab_image_from_detector_debug() (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method)

H

H (pyfast_adt.main.KalmanFilter attribute) (pyfast_adt.main.tracking.KalmanFilter attribute) (pyfast_adt.main.tracking.KalmanFilter.KalmanFilter attribute) h_track() (pyfast_adt.main.tracking.KF_custom_models.ukf_2D method) (pyfast_adt.main.tracking.KF_custom_models.ukf_4D method) (pyfast_adt.main.tracking.KF_custom_models.ukf_6D method)

haadf (pyfast_adt.main.FAST_ADT_gui.FastADT attribute) HandPanel (class in pyfast_adt.main.handpanels_simulator) host (pyfast_adt.main.server_socket_stream.server_img attribute)

I

im (in module pyfast_adt.main.tracking.sort_tracker) image (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) (pyfast_adt.main.server_socket_stream.server_img attribute) image_pixelsize() (in module pyfast_adt.main.fast_adt_func) image_to_streaming() (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) in_situ_run() (pyfast_adt.main.InSituTracker method) (pyfast_adt.main.tracking.insitu_tracker.InSituTracker method) (pyfast_adt.main.tracking.InSituTracker method) init_position_stage_tracking (pyfast_adt.main.FAST_ADT_gui.FastADT attribute) initialize_beam_position() (in module pyfast_adt.main.fast_adt_func) initialize_detector() (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) initialize_server() (pyfast_adt.main.server_sharedmemory_stream.camera_server method) input() (pyfast_adt.main.beam_calibration.BeamCalibration method) input_list() (pyfast_adt.main.beam_calibration.BeamCalibration method) insitu_obj_detection_sim() (pyfast_adt.main.InSituTracker method) (pyfast_adt.main.tracking.insitu_tracker.InSituTracker method) (pyfast_adt.main.tracking.InSituTracker method) insitu_tracker (in module pyfast_adt.main) (in module pyfast_adt.main.tracking) (in module pyfast_adt.main.tracking.insitu_tracker) InSituTracker (class in pyfast_adt.main) (class in pyfast_adt.main.tracking) (class in pyfast_adt.main.tracking.insitu_tracker) instance_gui (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta attribute) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf attribute) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 attribute) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r attribute)

intensity_ampl_value() (pyfast_adt.main.handpanels_simulator.HandPanel method) is_cam_bottom_mounted() (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) is_cam_streaming() (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) isStageMoving() (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_jeol method)

K

KalmanFilter (class in pyfast_adt.main) (class in pyfast_adt.main.tracking) (class in pyfast_adt.main.tracking.KalmanFilter) KF (pyfast_adt.main.Tomography_tracker attribute) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker attribute) kf (pyfast_adt.main.tracking.KF_custom_models.ukf_2D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_4D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_6D attribute)

KF (pyfast_adt.main.tracking.Tomography_tracker attribute), [1] KF_corrected_position (pyfast_adt.main.Tomography_tracker attribute) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker attribute) (pyfast_adt.main.tracking.Tomography_tracker attribute), [1] KF_lost_position (pyfast_adt.main.Tomography_tracker attribute) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker attribute) (pyfast_adt.main.tracking.Tomography_tracker attribute), [1]

L

label (in module pyfast_adt.main.tkinter_test) last_exposure (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) linear_interpolation_tracking_path() (in module pyfast_adt.main.fast_adt_func) link_browser() (pyfast_adt.main.main_GUI.MainGUI method) list_pix_to_beamshift() (pyfast_adt.main.beam_calibration.BeamCalibration method) list_pix_to_beamshift_stem() (in module pyfast_adt.main.fast_adt_func) list_templates (pyfast_adt.main.Tomography_tracker attribute) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker attribute) (pyfast_adt.main.tracking.Tomography_tracker attribute), [1] listConfigs() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) listDirectories() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) live_view_gui() (pyfast_adt.main.FAST_ADT_gui.FastADT method) load_calibration_table() (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method)

load_camera_table() (in module pyfast_adt.main.fast_adt_func) load_flatfield() (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) load_initial_parameters_experiment() (in module pyfast_adt.main.fast_adt_func) load_mib() (in module pyfast_adt.main.adaptor.camera.merlin_io) load_tracking_data_pyfast() (pyfast_adt.main.MastronardeRigidBody method) (pyfast_adt.main.tracking.MastronardeRigidBody method) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody method) load_tracking_file() (in module pyfast_adt.main.fast_adt_func) lock() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) lost_counter (pyfast_adt.main.Tomography_tracker attribute) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker attribute) (pyfast_adt.main.tracking.Tomography_tracker attribute), [1]

M

main() (in module pyfast_adt.main.client_socket_stream) (in module pyfast_adt.main.tracking.objTracking) (pyfast_adt.main.InSituTracker method) (pyfast_adt.main.Tomography_tracker method) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker method) (pyfast_adt.main.tracking.insitu_tracker.InSituTracker method) (pyfast_adt.main.tracking.InSituTracker method) (pyfast_adt.main.tracking.Tomography_tracker method), [1] MainGUI (class in pyfast_adt.main.main_GUI) manual_backlash_tui() (pyfast_adt.main.handpanels_simulator.HandPanel method) manual_tracking() (pyfast_adt.main.Tomography_tracker method) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker method) (pyfast_adt.main.tracking.Tomography_tracker method), [1] master (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei attribute) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy attribute) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol attribute) (pyfast_adt.main.adaptor.microscope.Tem_fei attribute) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy attribute) (pyfast_adt.main.adaptor.microscope.Tem_jeol attribute) (pyfast_adt.main.adaptor.Tem_fei attribute) (pyfast_adt.main.adaptor.Tem_fei_temspy attribute) (pyfast_adt.main.adaptor.Tem_jeol attribute) (pyfast_adt.main.handpanels_simulator.HandPanel attribute) (pyfast_adt.main.Tem_fei attribute) (pyfast_adt.main.Tem_fei_temspy attribute) (pyfast_adt.main.Tem_jeol attribute) mastronarde_point() (pyfast_adt.main.MastronardeRigidBody method) (pyfast_adt.main.tracking.MastronardeRigidBody method) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody method) mastronarde_rot2D() (pyfast_adt.main.MastronardeRigidBody static method) (pyfast_adt.main.tracking.MastronardeRigidBody static method) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody static method) MastronardeRigidBody (class in pyfast_adt.main) (class in pyfast_adt.main.tracking) (class in pyfast_adt.main.tracking.rigid_body_model) MAX_NUMFRAMESTOACQUIRE (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) merlin_cmd() (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) merlin_get() (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) merlin_set() (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) merlin_size (pyfast_adt.main.adaptor.camera.merlin_io.MIBProperties attribute) MIBProperties (class in pyfast_adt.main.adaptor.camera.merlin_io) microscope_thread_continuous() (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) microscope_thread_setup() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) model (in module pyfast_adt.main.tracking.rigid_body_model) module pyfast_adt pyfast_adt.importing_rule pyfast_adt.main pyfast_adt.main.adaptor pyfast_adt.main.adaptor.camera pyfast_adt.main.adaptor.camera.adaptor_cam pyfast_adt.main.adaptor.camera.adaptor_ceta pyfast_adt.main.adaptor.camera.adaptor_haadf pyfast_adt.main.adaptor.camera.adaptor_merlin pyfast_adt.main.adaptor.camera.adaptor_serval pyfast_adt.main.adaptor.camera.adaptor_simulator pyfast_adt.main.adaptor.camera.adaptor_timepix1 pyfast_adt.main.adaptor.camera.adaptor_us2000 pyfast_adt.main.adaptor.camera.adaptor_us4000 pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit pyfast_adt.main.adaptor.camera.merlin_io pyfast_adt.main.adaptor.microscope pyfast_adt.main.adaptor.microscope.adaptor_fei pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol pyfast_adt.main.adaptor.microscope.adaptor_jeol pyfast_adt.main.adaptor.microscope.adaptor_tem pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit pyfast_adt.main.beam_calibration pyfast_adt.main.client_sharedmemory_stream pyfast_adt.main.client_socket_stream pyfast_adt.main.fast_adt_func pyfast_adt.main.FAST_ADT_gui pyfast_adt.main.handpanels_simulator pyfast_adt.main.main_GUI pyfast_adt.main.server_sharedmemory_stream pyfast_adt.main.server_socket_stream pyfast_adt.main.temscript_remote_test pyfast_adt.main.tkinter_test pyfast_adt.main.tracking pyfast_adt.main.tracking.cross_correlation_kalman_filtered pyfast_adt.main.tracking.Detector pyfast_adt.main.tracking.insitu_tracker pyfast_adt.main.tracking.KalmanFilter pyfast_adt.main.tracking.KF_custom_models pyfast_adt.main.tracking.objTracking pyfast_adt.main.tracking.rigid_body_model pyfast_adt.main.tracking.sort_tracker mot_tracker (in module pyfast_adt.main.tracking.sort_tracker) move_beam_down() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) move_beam_left() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) move_beam_right() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) move_beam_up() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) move_screen() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method)

move_stage_down() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) move_stage_left() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) move_stage_right() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) move_stage_up() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) move_stage_z_down() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) move_stage_z_up() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method) move_stem_beam_down() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) move_stem_beam_left() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) move_stem_beam_right() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) move_stem_beam_up() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) MPX_CMD() (in module pyfast_adt.main.adaptor.camera.adaptor_merlin)

N

n (pyfast_adt.main.Tomography_tracker attribute) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker attribute) (pyfast_adt.main.tracking.Tomography_tracker attribute), [1] name (adaptor.camera.adaptor_cam.Cam_base attribute), [1] (adaptor.microscope.adaptor_tem.Tem_base attribute) (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base attribute) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta attribute) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf attribute) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 attribute) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator attribute) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r attribute) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute)

noise_std_Q (pyfast_adt.main.tracking.KF_custom_models.ukf_2D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_4D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_6D attribute) numberOfFramesInFile (pyfast_adt.main.adaptor.camera.merlin_io.MIBProperties attribute)

O

offset (pyfast_adt.main.adaptor.camera.merlin_io.MIBProperties attribute) open_additional_space() (pyfast_adt.main.FAST_ADT_gui.FastADT method)

open_dir() (pyfast_adt.main.FAST_ADT_gui.FastADT method) overall_tracking_precision() (in module pyfast_adt.main.fast_adt_func)

P

P (pyfast_adt.main.KalmanFilter attribute) (pyfast_adt.main.tracking.KalmanFilter attribute) (pyfast_adt.main.tracking.KalmanFilter.KalmanFilter attribute) packed (pyfast_adt.main.adaptor.camera.merlin_io.MIBProperties attribute) path (pyfast_adt.main.adaptor.camera.merlin_io.MIBProperties attribute) path1 (in module pyfast_adt.main) (in module pyfast_adt.main.adaptor.camera.adaptor_timepix1) (in module pyfast_adt.main.tracking) (in module pyfast_adt.main.tracking.cross_correlation_kalman_filtered) pix_to_beamshift() (pyfast_adt.main.beam_calibration.BeamCalibration method) pixelsize_nm (pyfast_adt.main.MastronardeRigidBody attribute) (pyfast_adt.main.tracking.MastronardeRigidBody attribute) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody attribute) pixelsize_um (pyfast_adt.main.MastronardeRigidBody attribute) (pyfast_adt.main.tracking.MastronardeRigidBody attribute) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody attribute) plot_insitu_result() (pyfast_adt.main.InSituTracker method) (pyfast_adt.main.tracking.insitu_tracker.InSituTracker method) (pyfast_adt.main.tracking.InSituTracker method) plot_intermediate (pyfast_adt.main.MastronardeRigidBody attribute) (pyfast_adt.main.tracking.MastronardeRigidBody attribute) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody attribute) plot_intermediate_dataset() (pyfast_adt.main.MastronardeRigidBody method) (pyfast_adt.main.tracking.MastronardeRigidBody method) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody method) plot_result() (pyfast_adt.main.Tomography_tracker method) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker method) (pyfast_adt.main.tracking.Tomography_tracker method), [1] plot_single_dataset_summary() (pyfast_adt.main.MastronardeRigidBody method) (pyfast_adt.main.tracking.MastronardeRigidBody method) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody method) plot_single_track() (pyfast_adt.main.Tomography_tracker method) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker method) (pyfast_adt.main.tracking.Tomography_tracker method), [1] plot_summary() (pyfast_adt.main.MastronardeRigidBody method) (pyfast_adt.main.tracking.MastronardeRigidBody method) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody method) plot_tracking() (pyfast_adt.main.Tomography_tracker method) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker method) (pyfast_adt.main.tracking.Tomography_tracker method), [1] plot_tracking_reevaluation() (pyfast_adt.main.Tomography_tracker method) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker method) (pyfast_adt.main.tracking.Tomography_tracker method), [1] plot_trajectories_stacked() (pyfast_adt.main.MastronardeRigidBody method) (pyfast_adt.main.tracking.MastronardeRigidBody method) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody method) plot_z_scan() (pyfast_adt.main.MastronardeRigidBody method) (pyfast_adt.main.tracking.MastronardeRigidBody method) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody method) points (pyfast_adt.main.tracking.KF_custom_models.ukf_2D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_4D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_6D attribute) port (pyfast_adt.main.server_socket_stream.server_img attribute) pos (in module pyfast_adt.main.tracking.sort_tracker) pos_x0 (pyfast_adt.main.tracking.KF_custom_models.ukf_2D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_4D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_6D attribute) pos_y0 (pyfast_adt.main.tracking.KF_custom_models.ukf_2D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_4D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_6D attribute) pred_support (in module pyfast_adt.main.tracking.sort_tracker) predict() (pyfast_adt.main.KalmanFilter method) (pyfast_adt.main.tracking.KalmanFilter method) (pyfast_adt.main.tracking.KalmanFilter.KalmanFilter method) (pyfast_adt.main.tracking.KF_custom_models.ukf_2D method) (pyfast_adt.main.tracking.KF_custom_models.ukf_4D method) (pyfast_adt.main.tracking.KF_custom_models.ukf_6D method) prepare_acquire_image_cred() (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) prepare_acquisition_cRED_data() (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) prepare_collection_cred_images() (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) prev_path (in module pyfast_adt.main.adaptor.microscope.adaptor_jeol) print_stop_event() (in module pyfast_adt.main.client_socket_stream) process_images_in_folder() (in module pyfast_adt.main.fast_adt_func) process_tracking_images() (in module pyfast_adt.main.fast_adt_func) processing (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base attribute) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta attribute) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf attribute) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator attribute) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r attribute) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute)

processing_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) pyfast_adt module pyfast_adt.importing_rule module pyfast_adt.main module pyfast_adt.main.adaptor module pyfast_adt.main.adaptor.camera module pyfast_adt.main.adaptor.camera.adaptor_cam module pyfast_adt.main.adaptor.camera.adaptor_ceta module pyfast_adt.main.adaptor.camera.adaptor_haadf module pyfast_adt.main.adaptor.camera.adaptor_merlin module pyfast_adt.main.adaptor.camera.adaptor_serval module pyfast_adt.main.adaptor.camera.adaptor_simulator module pyfast_adt.main.adaptor.camera.adaptor_timepix1 module pyfast_adt.main.adaptor.camera.adaptor_us2000 module pyfast_adt.main.adaptor.camera.adaptor_us4000 module pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU module pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit module pyfast_adt.main.adaptor.camera.merlin_io module pyfast_adt.main.adaptor.microscope module pyfast_adt.main.adaptor.microscope.adaptor_fei module pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy module pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei module pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol module pyfast_adt.main.adaptor.microscope.adaptor_jeol module pyfast_adt.main.adaptor.microscope.adaptor_tem module pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit module pyfast_adt.main.beam_calibration module pyfast_adt.main.client_sharedmemory_stream module pyfast_adt.main.client_socket_stream module pyfast_adt.main.fast_adt_func module pyfast_adt.main.FAST_ADT_gui module pyfast_adt.main.handpanels_simulator module pyfast_adt.main.main_GUI module pyfast_adt.main.server_sharedmemory_stream module pyfast_adt.main.server_socket_stream module pyfast_adt.main.temscript_remote_test module pyfast_adt.main.tkinter_test module pyfast_adt.main.tracking module pyfast_adt.main.tracking.cross_correlation_kalman_filtered module pyfast_adt.main.tracking.Detector module pyfast_adt.main.tracking.insitu_tracker module pyfast_adt.main.tracking.KalmanFilter module pyfast_adt.main.tracking.KF_custom_models module pyfast_adt.main.tracking.objTracking module pyfast_adt.main.tracking.rigid_body_model module pyfast_adt.main.tracking.sort_tracker module

Q

Q (pyfast_adt.main.KalmanFilter attribute) (pyfast_adt.main.tracking.KalmanFilter attribute) (pyfast_adt.main.tracking.KalmanFilter.KalmanFilter attribute)

quadscale (pyfast_adt.main.adaptor.camera.merlin_io.MIBProperties attribute) quit (pyfast_adt.main.server_socket_stream.server_img attribute)

R

R (pyfast_adt.main.KalmanFilter attribute) (pyfast_adt.main.tracking.KalmanFilter attribute) (pyfast_adt.main.tracking.KalmanFilter.KalmanFilter attribute) raster_scanning_userbeamshift() (in module pyfast_adt.main.fast_adt_func) raw (pyfast_adt.main.adaptor.camera.merlin_io.MIBProperties attribute) re_evaluate_backlash_data() (in module pyfast_adt.main.fast_adt_func) re_evaluate_crystal_tracking_path() (in module pyfast_adt.main.fast_adt_func) re_evaluate_manual_tracking_precision() (in module pyfast_adt.main.fast_adt_func) re_evaluate_tracking_precision() (in module pyfast_adt.main.fast_adt_func) read_tracking_file() (in module pyfast_adt.main.fast_adt_func) real_support (in module pyfast_adt.main.tracking.sort_tracker) receive_data() (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) receive_img() (in module pyfast_adt.main.client_socket_stream) receive_img_request() (in module pyfast_adt.main.client_socket_stream) release_connection() (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) release_server() (in module pyfast_adt.main.client_socket_stream) releaseConnection() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) reset_tracking_images() (in module pyfast_adt.main.fast_adt_func) result (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei attribute) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy attribute) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol attribute) (pyfast_adt.main.adaptor.microscope.Tem_fei attribute) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy attribute) (pyfast_adt.main.adaptor.microscope.Tem_jeol attribute) (pyfast_adt.main.adaptor.Tem_fei attribute) (pyfast_adt.main.adaptor.Tem_fei_temspy attribute) (pyfast_adt.main.adaptor.Tem_jeol attribute) (pyfast_adt.main.Tem_fei attribute) (pyfast_adt.main.Tem_fei_temspy attribute) (pyfast_adt.main.Tem_jeol attribute)

result_param (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) results (pyfast_adt.main.MastronardeRigidBody attribute) (pyfast_adt.main.tracking.MastronardeRigidBody attribute) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody attribute) retrieve_parameters_for_acquisition() (in module pyfast_adt.main.fast_adt_func) roi_rows (pyfast_adt.main.adaptor.camera.merlin_io.MIBProperties attribute) root (in module pyfast_adt.main.FAST_ADT_gui) (in module pyfast_adt.main.handpanels_simulator) (pyfast_adt.main.main_GUI.MainGUI attribute) rotate_img() (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) rotation_speed_value() (in module pyfast_adt.main.fast_adt_func) run() (pyfast_adt.main.tracking.KF_custom_models.ukf_2D method) (pyfast_adt.main.tracking.KF_custom_models.ukf_4D method) (pyfast_adt.main.tracking.KF_custom_models.ukf_6D method) run_fits() (pyfast_adt.main.MastronardeRigidBody method) (pyfast_adt.main.tracking.MastronardeRigidBody method) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody method) run_from_list() (pyfast_adt.main.beam_calibration.BeamCalibration method)

S

s_cmd (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) s_data (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) save_cRED_data() (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) save_tracking() (pyfast_adt.main.Tomography_tracker method) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker method) (pyfast_adt.main.tracking.Tomography_tracker method), [1] save_tracking_images() (in module pyfast_adt.main.fast_adt_func) scaling_factor (pyfast_adt.main.beam_calibration.BeamCalibration attribute) scan_size (pyfast_adt.main.adaptor.camera.merlin_io.MIBProperties attribute) second_iteration (pyfast_adt.main.InSituTracker attribute) (pyfast_adt.main.tracking.insitu_tracker.InSituTracker attribute) (pyfast_adt.main.tracking.InSituTracker attribute) select_other_KF_model() (pyfast_adt.main.Tomography_tracker method) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker method) (pyfast_adt.main.tracking.Tomography_tracker method), [1] semi_manual_stepwise() (in module pyfast_adt.main.fast_adt_func) send_image() (pyfast_adt.main.server_socket_stream.server_img method) send_img (pyfast_adt.main.server_socket_stream.server_img attribute) seq_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) series (pyfast_adt.main.Tomography_tracker attribute) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker attribute) (pyfast_adt.main.tracking.Tomography_tracker attribute), [1] series_support (pyfast_adt.main.Tomography_tracker attribute) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker attribute) (pyfast_adt.main.tracking.Tomography_tracker attribute), [1] server (in module pyfast_adt.main.server_socket_stream) server_img (class in pyfast_adt.main.server_socket_stream) server_socket (pyfast_adt.main.server_socket_stream.server_img attribute) set_alpha() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) set_alpha_temspy() (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.Tem_fei_temspy method) set_autoincrement() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) set_beam_shift() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) set_binning() (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) set_defocus() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) set_diff_setting() (in module pyfast_adt.main.fast_adt_func) set_exposure() (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) set_illumination_mode() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) set_image_index() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) set_image_setting() (in module pyfast_adt.main.fast_adt_func) set_image_size() (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) set_instrument_mode() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) set_intensity() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method)

set_KL() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) set_magnification() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) set_parameters_gui() (in module pyfast_adt.main.fast_adt_func) set_processing() (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) set_spotsize() (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_jeol method) set_stage_position() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) set_stem_beamshift() (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) set_xyz_temspy() (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.Tem_fei_temspy method) set_xyz_tui() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) setFunctionMode() (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_jeol method) setup_imported_methods() (in module pyfast_adt.main.adaptor.camera.adaptor_timepix1) setup_soft_trigger() (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) SHARED_MEM_NAME (in module pyfast_adt.main.client_sharedmemory_stream) (in module pyfast_adt.main.server_sharedmemory_stream) shared_mem_name (pyfast_adt.main.server_sharedmemory_stream.camera_server attribute) shift_image() (pyfast_adt.main.InSituTracker method) (pyfast_adt.main.tracking.insitu_tracker.InSituTracker method) (pyfast_adt.main.tracking.InSituTracker method) show() (pyfast_adt.main.adaptor.camera.merlin_io.MIBProperties method) shuffle_chip_order() (in module pyfast_adt.main.client_socket_stream) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) speed_tracking (pyfast_adt.main.handpanels_simulator.HandPanel attribute) stage_ampl_value() (pyfast_adt.main.handpanels_simulator.HandPanel method) start_experiment (pyfast_adt.main.FAST_ADT_gui.FastADT attribute) start_experiment() (in module pyfast_adt.main.fast_adt_func) start_fastadt() (pyfast_adt.main.main_GUI.MainGUI method) start_handpanels() (pyfast_adt.main.main_GUI.MainGUI method) start_liveview() (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) start_record() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) start_simulation() (pyfast_adt.main.server_sharedmemory_stream.camera_server method) START_SIZE (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) stem_mode_imaging() (in module pyfast_adt.main.fast_adt_func) stem_pixeltime_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) stem_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) stop_experiment() (in module pyfast_adt.main.fast_adt_func) stop_liveview() (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base method) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta method) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf method) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 method) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator method) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 method) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 method) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 method) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) stop_record() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) stop_signal (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base attribute) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta attribute) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf attribute) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator attribute) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r attribute) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) streamable (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) support1 (pyfast_adt.main.Tomography_tracker attribute) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker attribute) (pyfast_adt.main.tracking.Tomography_tracker attribute), [1] support_manual (pyfast_adt.main.Tomography_tracker attribute) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker attribute) (pyfast_adt.main.tracking.Tomography_tracker attribute), [1]

T

table (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base attribute) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta attribute) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf attribute) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator attribute) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r attribute) target (pyfast_adt.main.beam_calibration.BeamCalibration attribute) target_p (pyfast_adt.main.beam_calibration.BeamCalibration attribute) teardown_soft_trigger() (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin method) tem (in module pyfast_adt.main.adaptor.microscope.adaptor_jeol) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta attribute) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei attribute) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy attribute) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei attribute) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol attribute) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol attribute) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol attribute) (pyfast_adt.main.adaptor.microscope.Tem_fei attribute) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy attribute) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei attribute) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol attribute) (pyfast_adt.main.adaptor.microscope.Tem_jeol attribute) (pyfast_adt.main.adaptor.Tem_fei attribute) (pyfast_adt.main.adaptor.Tem_fei_temspy attribute) (pyfast_adt.main.adaptor.Tem_gatan_fei attribute) (pyfast_adt.main.adaptor.Tem_gatan_jeol attribute) (pyfast_adt.main.adaptor.Tem_jeol attribute) (pyfast_adt.main.Tem_fei attribute) (pyfast_adt.main.Tem_fei_temspy attribute) (pyfast_adt.main.Tem_gatan_fei attribute) (pyfast_adt.main.Tem_gatan_jeol attribute) (pyfast_adt.main.Tem_jeol attribute) Tem_base (class in adaptor.microscope.adaptor_tem) (class in pyfast_adt.main) (class in pyfast_adt.main.adaptor) (class in pyfast_adt.main.adaptor.microscope) (class in pyfast_adt.main.adaptor.microscope.adaptor_tem) Tem_fei (class in pyfast_adt.main) (class in pyfast_adt.main.adaptor) (class in pyfast_adt.main.adaptor.microscope) (class in pyfast_adt.main.adaptor.microscope.adaptor_fei) Tem_fei_temspy (class in pyfast_adt.main) (class in pyfast_adt.main.adaptor) (class in pyfast_adt.main.adaptor.microscope) (class in pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy) Tem_gatan_fei (class in pyfast_adt.main) (class in pyfast_adt.main.adaptor) (class in pyfast_adt.main.adaptor.microscope) (class in pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei) Tem_gatan_jeol (class in pyfast_adt.main) (class in pyfast_adt.main.adaptor) (class in pyfast_adt.main.adaptor.microscope) (class in pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol) tem_hide() (pyfast_adt.main.FAST_ADT_gui.FastADT method) tem_imagetime_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) Tem_jeol (class in pyfast_adt.main) (class in pyfast_adt.main.adaptor) (class in pyfast_adt.main.adaptor.microscope) (class in pyfast_adt.main.adaptor.microscope.adaptor_jeol) (class in pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit)

tem_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) test_beam_shift() (in module pyfast_adt.main.fast_adt_func) test_movie() (in module pyfast_adt.main.adaptor.camera.adaptor_merlin) test_plot_single_image() (in module pyfast_adt.main.adaptor.camera.adaptor_merlin) test_single_frame() (in module pyfast_adt.main.adaptor.camera.adaptor_merlin) test_tracking() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) test_tracking_stem() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_jeol method) theta_sim_deg (pyfast_adt.main.MastronardeRigidBody attribute) (pyfast_adt.main.tracking.MastronardeRigidBody attribute) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody attribute) tilt_step (pyfast_adt.main.InSituTracker attribute) (pyfast_adt.main.tracking.insitu_tracker.InSituTracker attribute) (pyfast_adt.main.tracking.InSituTracker attribute) tilt_step_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) timings (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base attribute) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator attribute) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 attribute) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r attribute) to_json() (in module pyfast_adt.main.fast_adt_func) tomo_tracker (pyfast_adt.main.InSituTracker attribute) (pyfast_adt.main.tracking.insitu_tracker.InSituTracker attribute) (pyfast_adt.main.tracking.InSituTracker attribute) Tomography_tracker (class in pyfast_adt.main) (class in pyfast_adt.main.tracking), [1] (class in pyfast_adt.main.tracking.cross_correlation_kalman_filtered) top_drc_index (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) top_drc_name (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) tpxDetectorID (in module pyfast_adt.main.adaptor.camera.adaptor_timepix1) tracking_done (pyfast_adt.main.FAST_ADT_gui.FastADT attribute) tracking_images_done (pyfast_adt.main.FAST_ADT_gui.FastADT attribute) tracking_precision_run() (in module pyfast_adt.main.fast_adt_func) tracking_precision_running (pyfast_adt.main.FAST_ADT_gui.FastADT attribute) tracking_step_value() (pyfast_adt.main.FAST_ADT_gui.FastADT method) type_dict (in module pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU) (in module pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit)

U

u (pyfast_adt.main.KalmanFilter attribute) (pyfast_adt.main.tracking.KalmanFilter attribute) (pyfast_adt.main.tracking.KalmanFilter.KalmanFilter attribute) ub (pyfast_adt.main.FAST_ADT_gui.FastADT attribute) ukf_2D (class in pyfast_adt.main.tracking.KF_custom_models) ukf_4D (class in pyfast_adt.main.tracking.KF_custom_models) ukf_6D (class in pyfast_adt.main.tracking.KF_custom_models) undo() (in module pyfast_adt.main.fast_adt_func) unlock() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) update() (pyfast_adt.main.KalmanFilter method) (pyfast_adt.main.tracking.KalmanFilter method) (pyfast_adt.main.tracking.KalmanFilter.KalmanFilter method) (pyfast_adt.main.tracking.KF_custom_models.ukf_2D method) (pyfast_adt.main.tracking.KF_custom_models.ukf_4D method) (pyfast_adt.main.tracking.KF_custom_models.ukf_6D method)

update_buffer() (pyfast_adt.main.server_sharedmemory_stream.camera_server method) update_experiment_number() (pyfast_adt.main.FAST_ADT_gui.FastADT method) update_image() (in module pyfast_adt.main.client_socket_stream) updated_positions (pyfast_adt.main.InSituTracker attribute) (pyfast_adt.main.tracking.insitu_tracker.InSituTracker attribute) (pyfast_adt.main.tracking.InSituTracker attribute) updated_positions_2 (pyfast_adt.main.InSituTracker attribute) (pyfast_adt.main.tracking.insitu_tracker.InSituTracker attribute) (pyfast_adt.main.tracking.InSituTracker attribute) url (pyfast_adt.main.adaptor.camera.adaptor_serval.Cam_medipix3 attribute) user_defined_ROI() (pyfast_adt.main.Tomography_tracker method) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker method) (pyfast_adt.main.tracking.Tomography_tracker method), [1]

V

var (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base attribute) (pyfast_adt.main.adaptor.microscope.Tem_base attribute) (pyfast_adt.main.adaptor.Tem_base attribute) (pyfast_adt.main.Tem_base attribute) var11 (pyfast_adt.main.FAST_ADT_gui.FastADT attribute) var12 (pyfast_adt.main.FAST_ADT_gui.FastADT attribute) vel_std_P (pyfast_adt.main.tracking.KF_custom_models.ukf_4D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_6D attribute)

vel_x0 (pyfast_adt.main.tracking.KF_custom_models.ukf_4D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_6D attribute) vel_y0 (pyfast_adt.main.tracking.KF_custom_models.ukf_4D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_6D attribute) visualization (pyfast_adt.main.Tomography_tracker attribute) (pyfast_adt.main.tracking.cross_correlation_kalman_filtered.Tomography_tracker attribute) (pyfast_adt.main.tracking.Tomography_tracker attribute), [1]

W

widget_status() (pyfast_adt.main.FAST_ADT_gui.FastADT method) (pyfast_adt.main.handpanels_simulator.HandPanel method) window (in module pyfast_adt.main.tkinter_test) wobbler() (pyfast_adt.main.adaptor.microscope.adaptor_fei.Tem_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_fei_temspy.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_fei.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.adaptor_gatan_jeol.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_jeol.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base method) (pyfast_adt.main.adaptor.microscope.generalized_adaptor_to_edit.Tem_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_base method) (pyfast_adt.main.adaptor.microscope.Tem_fei method) (pyfast_adt.main.adaptor.microscope.Tem_fei_temspy method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_fei method) (pyfast_adt.main.adaptor.microscope.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.microscope.Tem_jeol method) (pyfast_adt.main.adaptor.Tem_base method) (pyfast_adt.main.adaptor.Tem_fei method) (pyfast_adt.main.adaptor.Tem_fei_temspy method) (pyfast_adt.main.adaptor.Tem_gatan_fei method) (pyfast_adt.main.adaptor.Tem_gatan_jeol method) (pyfast_adt.main.adaptor.Tem_jeol method) (pyfast_adt.main.Tem_base method) (pyfast_adt.main.Tem_fei method) (pyfast_adt.main.Tem_fei_temspy method) (pyfast_adt.main.Tem_gatan_fei method) (pyfast_adt.main.Tem_gatan_jeol method) (pyfast_adt.main.Tem_jeol method)

write_cam_table() (in module pyfast_adt.main.fast_adt_func) write_eadt_file() (in module pyfast_adt.main.fast_adt_func) write_pets_file() (in module pyfast_adt.main.fast_adt_func) write_report_experiment() (in module pyfast_adt.main.fast_adt_func) write_tracking_file() (in module pyfast_adt.main.fast_adt_func) writeTiff() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) writeTiffFromPointer() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method) writeTiffs() (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r method) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r method)

X

x (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base attribute) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta attribute) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf attribute) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator attribute) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r attribute) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base attribute) (pyfast_adt.main.adaptor.microscope.Tem_base attribute) (pyfast_adt.main.adaptor.Tem_base attribute) (pyfast_adt.main.KalmanFilter attribute) (pyfast_adt.main.Tem_base attribute) (pyfast_adt.main.tracking.KalmanFilter attribute) (pyfast_adt.main.tracking.KalmanFilter.KalmanFilter attribute)

x_std_P (pyfast_adt.main.tracking.KF_custom_models.ukf_2D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_4D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_6D attribute) x_std_R (pyfast_adt.main.tracking.KF_custom_models.ukf_2D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_4D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_6D attribute) xy (pyfast_adt.main.adaptor.camera.merlin_io.MIBProperties attribute)

Y

y (pyfast_adt.main.adaptor.camera.adaptor_cam.Cam_base attribute) (pyfast_adt.main.adaptor.camera.adaptor_ceta.Cam_ceta attribute) (pyfast_adt.main.adaptor.camera.adaptor_haadf.Cam_haadf attribute) (pyfast_adt.main.adaptor.camera.adaptor_merlin.Cam_merlin attribute) (pyfast_adt.main.adaptor.camera.adaptor_simulator.Cam_simulator attribute) (pyfast_adt.main.adaptor.camera.adaptor_timepix1.Cam_timepix1 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us2000.Cam_us2000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_us4000.Cam_us4000 attribute) (pyfast_adt.main.adaptor.camera.adaptor_xf416r_GPU.Cam_xf416r attribute) (pyfast_adt.main.adaptor.camera.generalized_adapcam_to_edit.Cam_xf416r attribute) (pyfast_adt.main.adaptor.microscope.adaptor_tem.Tem_base attribute) (pyfast_adt.main.adaptor.microscope.Tem_base attribute) (pyfast_adt.main.adaptor.Tem_base attribute) (pyfast_adt.main.Tem_base attribute)

y_std_P (pyfast_adt.main.tracking.KF_custom_models.ukf_2D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_4D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_6D attribute) y_std_R (pyfast_adt.main.tracking.KF_custom_models.ukf_2D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_4D attribute) (pyfast_adt.main.tracking.KF_custom_models.ukf_6D attribute)

Z

zero_pos_col (pyfast_adt.main.FAST_ADT_gui.FastADT attribute) (pyfast_adt.main.handpanels_simulator.HandPanel attribute) zero_pos_row (pyfast_adt.main.FAST_ADT_gui.FastADT attribute) (pyfast_adt.main.handpanels_simulator.HandPanel attribute)

zheng_point() (pyfast_adt.main.MastronardeRigidBody method) (pyfast_adt.main.tracking.MastronardeRigidBody method) (pyfast_adt.main.tracking.rigid_body_model.MastronardeRigidBody method)